Aaron and Max! Thanks so much for your work on this. I have sent over
the methods and data to Stanford and they're excited about
incorporating this into a full study. You are awesome. Jake (Ocaasi)
On 10/22/14, wiki-research-l-request(a)lists.wikimedia.org
<wiki-research-l-request(a)lists.wikimedia.org> wrote:
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> Today's Topics:
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> 1. Re: Extracting PMIDs (Maximilian Klein)
> 2. Re: Extracting PMIDs (Aaron Halfaker)
> 3. Re: Extracting PMIDs (Maximilian Klein)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 22 Oct 2014 11:27:09 -0700
> From: Maximilian Klein <isalix(a)gmail.com>
> To: Research into Wikimedia content and communities
> <wiki-research-l(a)lists.wikimedia.org>rg>, Jake Orlowitz
> <jorlowitz(a)gmail.com>
> Subject: Re: [Wiki-research-l] Extracting PMIDs
> Message-ID:
> <CAKbmofi_RDgq+vh2MTwWpBObahrwLpw5dXBS9y+XmUga2VPybg(a)mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Jake,
> I have script that does this already for DOIs, Its was one-line change to
> make. These files should answer what you were looking for.
>
>
https://raw.githubusercontent.com/notconfusing/listiness/pmc/pmc_list.txt
>
https://raw.githubusercontent.com/notconfusing/listiness/pmc/pmid_list.txt
>
> In the future you can tell them to use halfak's
>
https://pythonhosted.org/mediawiki-utilities/
> This is the code I used to get those lists.
>
https://github.com/notconfusing/listiness/commit/e140ce9202b9c1098dec40ca1d…
>
> Make a great day,
> Max Klein ‽
http://notconfusing.com/
>
> On Mon, Oct 20, 2014 at 9:20 PM, Andrew G. West <west.andrew.g(a)gmail.com>
> wrote:
>
>> Jake,
>>
>> Yes, its a rather straightforward parse based on the citation format which
>> Jeremy described. Doc James and I already have this coded up for a soon to
>> be published [[WP:MED]] readership/editorship paper.
>>
>> Searching for PMID's in the entirety of the Wikipedia article base would
>> be a bit time consuming -- but if one needs to pull down only articles in
>> WikiProject Medicine, for example, I am also able to help on that front.
>>
>> Perhaps we'll take this offline, but if anyone else is interested in the
>> dirty details, feel free to contact one of us off-list. -AW
>>
>> --
>> Andrew G. West, PhD
>>
http://www.andrew-g-west.com
>>
>>
>>
>> On 10/20/2014 11:57 PM, Jake Orlowitz wrote:
>>
>>> Hi folks,
>>>
>>> Relaying a question from a Stanford medical researcher:
>>>
>>> "Do you know if it is possible to extract PubMed ID (PMID) or PMCIDs
>>> from Wiki references? Furthermore, could you dump those IDs out into a
>>> list for analysis?"
>>>
>>> Best,
>>> Jake Orlowitz (Ocaasi)
>>>
>>>
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